Faculty Publication

Institute of Biology

	Document Title	Authors	Year	Source
1	Three new species and a new record of pheretimoid earthworms (Crassiclitellata, megascolecidae) from Misamis Oriental, Philippines, with data from the mitochondrial genome	Aspe, N. M., Zhao, H., Mapile, M. R. F., Obusan, M. C. M., Zhang, Y., Castañares, E., Florida, E. J. D., & Wu, D.	2025	Zoosystematics and Evolution, 101(1), 389–404
2	Reduction of mangrove carbon stock ecosystems due to illegal logging using a combination of unmanned aerial vehicle imagery and field surveys	Basyuni, M., Amelia, R., Aznawi, A. A., Wirasatriya, A., Iryanthony, S. B., Slamet, B., Al Mustaniroh, S. S., Rahmania, R., Rahmila, Y. I., Sumarga, E., Larekeng, S. H., Salmo III, S., Kajita, T., Sivaipram, I., & Ali, H. M.	2025	Global Journal of Environmental Science and Management, 11(1)
3	Mangrove aboveground biomass estimation using UAV imagery and a constructed height model in Budeng–Perancak, Bali, Indonesia	Basyuni, M., Mubaraq, A., Amelia, R., Wirasatriya, A., Iryanthony, S. B., Slamet, B., Al Mustaniroh, S. S., Pradisty, N. A., Sidik, F., Hanintyo, R., Sumarga, E., Larekeng, S. H., Salmo, S. G., Kajita, T., Ali, H. M., Sakti, A. D., & Arifanti, V. B.	2025	Ecological Informatics, 86, 103037
4	Molecular signatures reveal intra-species divergence, undetectable by traditional morphology, in the deadly box jellyfish, Chironex yamaguchii (Cubozoa; chirodropidae) of Western Pacific	Boco, S. R., Capidos, C. G. G., Fornillos, R. J., Sucharitakul, P., Lawley, J. W., Talacay, D., Collins, A. G., Fontanilla, I. K., Comendador, J. E., & Ladiao, F. R. M.	2025	Regional Studies in Marine Science, 82, 104033
5	Polytetrafluoroethylene (Ptfe) microplastics affect angiogenesis and central nervous system (Cns) development of duck embryo	Campos, A. R. A., Luza, K. M. B., Subebe, M. J. B., Tabelin, C. B., Phengsaart, T., Arima, T., Seno, R., Butalid, R., Escabarte, A. B., Mazahery, A. R. F., Coyoca, G. S. E., & Villacorte-Tabelin, M.	2025	Emerging Contaminants, 11(1), 100433
6	Lymphovascular invasion is associated with doxorubicin resistance in breast cancer	Corachea, A. J. M., Ferrer, R. J. E., Ty, L. P. B., Aquino, L. A. C., Morta, M. T., Macalindong, S. S., Uy, G. L. B., Odoño, E. G., Llames, J.-H. S., Tablizo, F. A., Cutiongco-Dela Paz, E. M. C., Dofitas, R. B., & Velarde, M. C.	2025	Laboratory Investigation, 105(5), 104115
7	In silico genome mining of nodosilinea sp. PGN35 and chlorogloeopsis sp. ULAP02 revealed biofertilizer-essential genes	Dela Cerna, V.A.M.V., Cao, E.P., Sanchez, L.R.S., Untiveros, D.P.M., Tengco, M.T.T., & Santos, D.M.C.	2025	Philippine Journal of Science, 154(1), 93-107
8	Cross-taxon congruence of terrestrial vertebrates across Philippine Key Biodiversity Areas	Fidelino, J. S., Constantino, R. R. P., & Duya, M. R. M.	2025	Journal for Nature Conservation, 86, 126907
9	Uplc-qtof mass spectrometry detection of four endocrine disrupting chemicals (Methyl paraben, 2,4-dichlorophenoxyacetic acid, monobutyl phthalate, and bisphenol a) in urine of filipino women	Heralde,F.M., Martin, Z.T., Cagayan, M.S.F.S., Uy, M.E.V., Ubial, P.J.R., Velarde, M.C., & Llamas-Clark, E.F.	2025	Acta Medica Philippina, 59(3), 70-71
10	Aeschynanthus pentatrichomatus (Gesneriaceae), a new species of lipstick vine from the banao protected landscape of luzon island in the Philippines	Malabrigo, P. L., Tobias, A. B., Thorogood, C. J., & Mansibang, J. A.	2025	Nordic Journal of Botany, 2025(3), e04580
11	Combined application of metagenomics and FEAST to trace sources of microbial eukaryotic contamination in the Pasig–Marikina–San Juan (Pamarisan) river system in Metro Manila, Philippines	Mamawal, D. R. D., & Rivera, W. L.	2025	Environmental Monitoring and Assessment, 197(2), 196
12	Microbes and metabolites of a plant-parasite interaction: Deciphering the ecology of Tetrastigma host choice in the world’s largest parasitic flower, Rafflesia	Molina, J., De Guzman, R. C., Abzalimov, R., Huang, W., Guruprasad, A., Pedales, R., Wicaksono, A., Davis, D., Callado, J. R., Bänziger, H., Suksathan, P., Eaton, W., Yin, P., Bürger, M., Erickson, M., Jones, S., Adams, J., & Pell, S.	2025	Current Plant Biology, 42, 100456
13	The seed transcriptome of Rafflesia reveals horizontal gene transfer and convergent evolution: Implications for conserving the world’s largest flower	Molina, J., Wicaksono, A., Michael, T. P., Kwak, S., Pedales, R. D., Joly‐Lopez, Z., Petrus, S., Mamerto, A., Tomek, B., Ahmed, S., Maddu, V., Yakubova, K., Tandang, D., Morin, J. W., Park, S., Lee, H., McLaughlin, W., Wallick, K., Adams, J., … Purugganan, M. D.	2025	PLANTS, PEOPLE, PLANET, 7(2), 448–466
14	Genomic characterization of antimicrobial-resistant Salmonella enterica in chicken meat from wet markets in Metro Manila, Philippines	Nagpala, M. J. M., Mora, J. F. B., Pavon, R. D. N., & Rivera, W. L.	2025	Frontiers in Microbiology, 16, 1496685
15	Comparative genomics reveals putative copper tolerance genes in a Fusarium oxysporum strain	Ragasa, L. R. P., Cuomo, C. A., Del Rosario, R. C. H., & Velarde, M. C.	2025	G3: Genes, Genomes, Genetics, 15(1), jkae272
16	Variable peptide processing of a Conus (Asprella) neocostatus α-conotoxin generates bioactive toxiforms that are potent against distinct nicotinic acetylcholine receptor subtypesBacterial community profiles of select tributaries of Laguna Lake in the Philippines	Ramones, C. M. V., Taguchi, R. S., Gamba, E. M. E., Johann E. Isagan, A. E., Watkins, M., Chicote, M. O., Velarde, M. C., Villaraza, A. J. L., Yu, E. T., Olivera, B. M., Concepcion, G. P., & Lluisma, A. O.	2025	Biochemical Pharmacology, 233, 116781
17	Exploring the taxonomical and functional profiles of marine microorganisms in Submarine Groundwater Discharge vent water from Mabini, Batangas, Philippines through metagenome-assembled genomes	Veluz, J. T., Mallari, L. A. N., Gloria, P. C. T., & Siringan, M. A. T.	2025	Frontiers in Genetics, 16, 1522253

Institute of Chemistry

	Document Title	Authors	Year	Source
1	Molecular iodine-mediated β-glycosylation of thiomannosides with 1,6-anhydrosugars	Atito, A., Dumalaog, J. S., Tseng, K.-Y., Ting, Y.-J., Zulueta, M. M. L., & Hung, S.-C.	2025	Organic Letters, acs.orglett.5c00388
2	The importance of helical structures to the overall activity and structural stability of a lipase from Pseudomonas aeruginosa PAO1 in n-hexane	Cabanding, J. M. G., Yu, S. S.-F., Lin, Z.-H., Fortuna, M. A., Elatico, A. J. J., & Nellas, R. B.	2025	Archives of Biochemistry and Biophysics, 764.
3	A rapid and high-throughput fraud detection method of Philippine coconut wine (lambanog) using 1H qNMR spectroscopy	Caleja-Ballesteros, H. J. R., & Ballesteros, J. I.	2025	Food Additives and Contaminants – Part A, 42(2), 159–168
4	Exploring the effects of N234 and N343 linked glycans to SARS CoV 2 spike protein pocket accessibility using Gaussian accelerated molecular dynamics simulations	Cheng, R. L., Lim, J. P. L., Fortuna, M. A., Reyes, D. V., Hans, E. A. D. R., & Nellas, R. B.	2025	Scientific Reports, 15(1), 7052
5	Discovery of Key Candidate Protein Biomarkers in Early-Stage Nonsmall Cell Lung Carcinoma through Quantitative Proteomics	Dimayacyac-Esleta, B. R. T., Mira, F. D., Zarate, L. M., Porras, B. J. O., Juntilla, D. L. A., Suñga, L. B. L., Pondevida, V. B., Naval, S. S., Sayo, T. M. S., Luna, H. G. C., & Prieto, E. I.	2025	Journal of Proteome Research
6	A systematic study on the use of biogenic acids in directing the hyperbranched growth of Au nanocorals	Ende, C. P. Y., Ramos, R. M. C. R., Pangilinan, P. J. A., Bautista, R. I., Escosio, J. R. L., & Regulacio, M. D.	2025	CrystEngComm.
7	Philippine Traditional Alcoholic Beverages: A Germinal Stud	Gregorio, C. G. C.	2025	Vol. Part F3607 (p. 1179)
8	Variable peptide processing of a Conus (Asprella) neocostatus α-conotoxin generates bioactive toxiforms that are potent against distinct nicotinic acetylcholine receptor subtypes	Ramones, C. M. V., Taguchi, R. S., Gamba, E. M. E., Johann E. Isagan, A. E., Watkins, M., Chicote, M. O., Velarde, M. C., Villaraza, A. J. L., Yu, E. T., Olivera, B. M., Concepcion, G. P., & Lluisma, A. O.	2025	Biochemical Pharmacology, 233
9	Norleucine Substitution Enhances Self-Assembly of a Lanthanide-Binding Polypeptide Coiled Coil	Sarte, D., & Villaraza, A.	2025	Journal of Peptide Science, 31(2)

Institute of Environmental Science and Meteorology

	Document Title	Authors	Year	Source
1	Hydrowatch: An iot-based in situ sensor system for remote water quality monitoring with chlorophyll-a and phosphate concentration measurement capabilities	Abonal, J. D., Uy, M. J., De Guzman, J., Ligaray, M., & Cayetano, M.	2025	TENCON 2024 – 2024 IEEE Region 10 Conference
2	Integrated multi-satellite data and machine learning approach in mapping the successional stages of forest types in a tropical montane forest	Altarez, R. D. D., Apan, A., & Maraseni, T.	2025	Remote Sensing Applications Society and Environment
	The perspectives of remote sensing and GIS on military environmental impacts: a systematic review	Altarez, R. D. D., Apan, A., & Maraseni, T.	2025	Environmental Monitoring and Assessment
	A novel hybrid approach for efficiently forecasting air quality data	Borah, J., Chakraborty, T., Nadzir, M. S. M., Cayetano, M. G., Benedetto, F., & Majumdar, S.	2025	IEEE Sensors Letters
	Timezone-Aware Auto-Regressive Long Short-Term memory model for multipollutant prediction	Borah, J., Nadzir, M. S. M., Cayetano, M. G., Ghayvat, H., Majumdar, S., & Srivastava, G.	2025	IEEE Transactions on Systems Man and Cybernetics Systems
	Navigating challenges and charting solutions of water issues in Southeast Asia	Chuah, J., Cayetano, M. G., Ho, H. L. J., Lim, H. S., Nastiti, A., & Tan, M. L.	2025	ACS ES&T Water
	Hitchhikers and anglers: Novel ectosymbioses and predatory interactions with carybdeid box jellyfishes (Cnidaria: cubozoa: carybdeida) confirmed by citizen science and digital morphological analyses	Corcino, R. C. B., Boco, S. R., Sucharitakul, P., Cabasan, J., Capidos, C. G. G., Yoro, R., Corpuz, D., Tuason, S., & Aragones, L. V.	2025	Symbiosis
	Assessing the spatio-temporal activity pattern and habitat use of bengal tiger (Panthera tigris tigris) across three forest management regimes in nepal	Maharjan, A., Maraseni, T., Allen, B. L., & Apan, A.	2025	Biodiversity and Conservation
	Aboveground biomass estimation of an old‐growth mangrove forest using airborne LiDAR in the Philippines	Mandal, M. S. H., Suwa, R., Rollon, R. N., Albano, G. M. G., Cruz, G. A. A., Ono, K., Primavera‐Tirol, Y. H., Blanco, A. C., & Nadaoka, K.	2025	Ecological Research
	Groundwater quality variations during wet and dry seasons in agricultural and forested areas in the philippines	Velasco, A. B., Magbanua, F. S., Del Rosario, J. S., Estrada, J. L., Fraga, J. K. R., Mondejar, J. P., Sapitan, J. F. J. F., Geroza, I. P., Tenoc, G. L., & Husana, D. E. M.	2025	Water Resources

Institute of Mathematics

	Document Title	Authors	Year	Source
1	Blow-up of solutions to some classes of ill-posed operator equations and a growth quantification result	Abbas, J. R., Flores, M. G. C., Reyes, N. N., & Vallejo, L. J. D.	2025	Journal of Inverse and Ill-Posed Problems
2	On locally n × n grid graphs	Amarra, C., Jin, W., & Praeger, C. E.	2025	Journal of Combinatorial Theory Series A, 209, 105957
3	Disentangling climate’s dual role in dengue dynamics: A multiregion causal analysis study	Cawiding, O. R., Jeon, S., Tubera-Panes, D., De Los Reyes, A. A., V., & Kim, J. K.	2025	Science Advances, 11(7)
4	The products of involutions in the centralizer of a Weyr matrix with nonhomogeneous Weyr structure	De La Cruz, R. J. L., & Tañedo, R. L. S.	2025	Linear and Multilinear Algebra, 1–16
5	On commutators of unipotent matrices of index	Dela Rosa, K. L., & Santos, J. P. C.	2025	Linear Algebra and Its Applications
6	Note on Congruences for Generalized Cubic Partitions Modulo Primes	Guadalupe, R.	2025	Integers, 25, A20
7	Analogue of Ramanujan’s function $$k(tau )$$ for the continued fraction $$X(tau )$$ of order six	Guadalupe, R., & Aricheta, V. M.	2025	ANNALI DELL UNIVERSITA DI FERRARA, 71(1)
8	Embedding-Based comparison of reaction networks of WNT signaling	Hernandez, B. S., Lubenia, P. V. N., & Mendoza, E. R.	2025	Match Communications in Mathematical and in Computer Chemistry, 93(1), 235–245
9	Equilibria Decomposition-Based comparison of reaction networks of WNT signaling	Hernandez, B. S., Lubenia, P. V. N., & Mendoza, E. R.	2025	Match Communications in Mathematical and in Computer Chemistry, 93(2), 291–318
10	Differential evolution with spherical search algorithm for nonlinear engineering and infectious disease optimization problems	Lee, J., Mendoza, R., Mendoza, V. M. P., & Jung, E.	2025	Applied Soft Computing, 168, 112446
11	Symplectic codes over a non-unitary ring	Manseri, S., Betty, R. A., Galvez, L., & Sole, P.	2025	Journal of Algebra and Its Applications
12	MaBaybay-OCR: A Matlab-based Baybayin optical character recognition package	Pino, R., Mendoza, R., & Sambayan, R.	2025	SoftwareX, 29, 102003
13	Weakly Reversible realizations of Biochemical Systems Theory (BST) models	Villejo, E. J. V., & Talabis, D. a. S.	2025	Match Communications in Mathematical and in Computer Chemistry, 93(3), 631–687

Materials Science and Engineering Program

	Document Title	Authors	Year	Source
1	Spatial variation of the elemental components of thin films from BiSrCaCuO target deposited using low energy femtosecond pulsed laser deposition in high background gas pressure Low er	De Mata, J. K., Sarmago, R., Garcia, W., & Dasallas, L.	2025	Journal of Vacuum Science & Technology B Nanotechnology and Microelectronics Materials Processing Measurement and Phenomena, 43(2)
2	Direct simulation Monte Carlo modeling of shock-plume interactions during laser-produced plasma expansion in a background gas	Emperado, R. B., Zosa, M. a. H., Dasallas, L. L., & Garcia, W. O.	2025	Physics of Fluids, 37(3)

Marine Science Institute

	Document Title	Authors	Year	Source
1	Microbiome stability is linked to Acropora coral thermotolerance in northwestern Philippines	Baquiran, J.I., Quijano, J.B., van Oppen, M.J.H., Cabaitan, P.C., Harrison, P.L., & Conaco, C.	2025	Environmental Microbiology, 27(2), e70041
2	Genomic divergence and limited dispersal of blue coral, Heliopora lineages, across the western Philippine coast revealed by microsatellite and SNP markers	Casilagan, I.L.N., Yu, I.D., Roa, M.B., & Ravago-Gotanco, R.	2025	Coral Reefs, e0119585.
3	Mesoplastics: A review of contamination status, analytical methods, pollution sources, potential risks, and future perspectives of an emerging global environmental pollutant	Ellos, D.M.C., Chien, M.F., Inoue, C., Nakano, H., Isobe, A., Onda, D.F.L., … & Bacosa, H.P.	2025	Toxics, 13(3), 227
4	Modeling pharmaceutical contaminant transport in an urban coastal estuarine system: The case of Manila Bay, Philippines	Enova, A.E.R., Singh, R.R., Aga, D.S., Mariano, S.M.F., Villanoy, C.L., & Jaraula, C.M.B.	2025	Water, 5(1), 156-167
5	QGIS Shoreline Change Analysis Tool (QSCAT): A fast, open-source shoreline change analysis plugin for QGIS	Facun, L.P., Maria, M.Y.S., Ducao, R., Clemente, J.J., Carmelo, E.M., Maon, A., … & Siringan, F.	2025	Modelling & Software, 106263
6	Use of shelters for restocking hatchery-produced Stichopus cf. horrens juveniles	Ibañez, G.S., Baure, J.G., Soy, R.C., & Juinio-Meñez, M.A.	2025	Marine Science, 101(1), 297-313
7	Draft genome of the endangered visayan spotted deer (Rusa alfredi), a Philippine endemic species	Javier, M.C.F., Noblezada, A.C., Sienes, P.M.Q., Guino-o, R.S., Palomar-Abesamis, N., Malay, M.C.D., … & Ferriols, V.M.E.N.	2025	Gigabyte, 1-18
8	Characterization of coral communities in the shallow hydrothermal vents of Mabini, Batangas, Philippines	Maningas, J.A.C., Ticzon, V.S., & Rodriguez, M.V.B.	2025	Regional Studies in Marine Science, 81, 103943
9	Diel variations in nutrient physiology among commercially important eucheumatoids Kappaphycus alvarezii, K. striatus and Eucheuma denticulatum	Narvarte, B.C.V., Mendoza, E.M., Gacura, J.R.L., Hinaloc, L.A.R., & Roleda, M.Y.	2025	Planta, 261(5), 96
10	Variable peptide processing of a Conus (Asprella) neocostatus α-conotoxin generates bioactive toxiforms that are potent against distinct nicotinic acetylcholine receptor subtypes	Ramones, C.M.V., Taguchi, R.S., Gamba, E.M.E., Isagan, A.E.J.E., Watkins, M., Chicote, M.O., … Yu, E.T., Olivera, B.M., Concepcion, G.P., & Lluisma, A.O.	2025	Biochemical Pharmacology, 116781
11	Molecular diversity of reef-associated crustose coralline algae (Corallinophycidae, Rhodophyta) of the Spermonde Archipelago, Indonesia.horrens) in the Philippines	Ramos, D.A.E., Parenden, D., Abas, A.R.E.P., Santiañez, W.J.E., Torres, A.F., Mushlihah, H., … Braga, J.C.	2025	Phycologia, 1–15
12	The neuropeptidomes of the sea cucumbers Stichopus cf. horrens and Holothuria scabra	Resoles, J.A.A., & Yu, E.T.	2025	Scientific Reports, 15(1), 7032
13	Shot in the foot: Unintended consequences of using inorganic fertilizer in commercial tropical eucheumatoid seaweed farming	Roleda, M.Y., Tahiluddin, A.B., Neish, I.C., & Critchley, A.T.	2025	Reviews in Aquaculture, 17(2), e70019
14	Effects of stocking density and shelter on the behavior, growth, and survival of Stichopus cf. horrens juveniles	Salva, J.C.R., Slater, M.J., & Juinio-Meñez, M.A.	2025	Aquaculture, 741827
15	Chlorophyll-a enhancement induced by monsoonal island wakes in the western region of Camiguin Island, the Philippines	Sihay, J.C.A., Acabado, C.S., & Villanoy, C.L.	2025	Philippine Journal of Science, 154(1), 169-178
16	Differences in gut microbial diversity and composition between growth phenotypes of farmed juvenile sandfish, Holothuria scabra	Tabardillo Jr., J.A., Juinio-Meñez, M.A., Reitzel, A.M., & Ravago-Gotanco, R.	2025	Microbiology, 25, 14
17	Applications of inorganic nutrient enrichment in Eucheumatoid seaweed farming: A double-edged sword?	Tahiluddin, A.B., & Roleda, M.Y.	2025	Research, 86, 103922
18	Chromosome-level assembly and gene annotation of Kappaphycus striatus genome	Zhou, Z., Ma, Y., Zhang, J., Firdaus, M., Roleda, M.Y., & Duan, D.	2025	Scientific Data, 12(1), 249

National Institute of Geological Sciences

	Document Title	Authors	Year	Source
1	Behavioral intention to use electronic cigarettes in the Philippines: The role of social influence, knowledge, price and health impact	Belmonte, Z. J. A., Prasetyo, Y. T., Victoria, P. E. R., Cahigas, M. M. L., Nadlifatin, R., & Gumasing, Ma. J. J.	2025	PLOS ONE, 20(2), e0318630
2	Immobilization of chromium by iron oxides in nickel–cobalt laterite mine tailings	Delina, R. E., Perez, J. P. H., Roddatis, V. V., Stammeier, J. A., Prieur, D., Scheinost, A. C., Tan, M. M., Garcia, J. J. L., Arcilla, C. A., & Benning, L. G.	2025	Environmental Science & Technology, 59(11), 5683–5692
3	Paleoichthyology in the Philippines: A review of Cenozoic fish fossils with insights on its current status and future opportunities	Mediodia, D., Castro, A., Tablizo, M., Policarpio, D., Calvelo, J., Baguio, J. P., Borja, A., Lin, C.-H., & Fernando, A. G.	2025	Geobios, 88–89, 163–174
4	Enhancing geothermal petrography with convolutional neural networks	Padrique, M. G. C., Narag, M. J. G., Fernando, A. G. S., & Soriano, M. N.	2025	Geothermics, 127, 103221
5	Uplifted late Quaternary marine terraces along the southern coast of Bohol Island, central Philippines, and their active tectonic implications	Shyu, J. B. H., Hsieh, P.-K., Ramos, N. T., Chiang, H.-W., Liu, S.-C., & Shen, C.-C.	2025	Geoscience Letters, 12(1), 9
6	Fossil fish assemblage of the Laguna Formation, Philippines: unveiling the uniqueness of Pleistocene freshwater ecosystems in Southeast Asia	Tomáš Přikryl, Castro, A., Fernando, A. G., Nogot, C., Magtoto, C., Garas, K., Mediodia, D., & Lin, C.-H.	2025	Swiss Journal of Palaeontology, 144(1)

National Institute of Molecular Biology & Biotechnology

	Document Title	Authors	Year	Source
1	Transcriptomic Profiling Provides Insight into the Molecular Basis of Heterosis in Philippine-Reared Bombyx mori Hybrids	Conde, M. Y. E. D., Planta, J., & Bautista, M. a. M.	2025	Insects, 16(3), 243
2	Discovery of Key Candidate Protein Biomarkers in Early-StageNonsmall Cell Lung Carcinoma through Quantitative Proteomics	Dimayacyac-Esleta, B. R. T., Mira, F. D., Zarate, L. M., Porras, B. J. O., Juntilla, D. L. A., Suñga, L. B. L., Pondevida, V. B., Naval, S. S., Sayo, T. M. S., Luna, H. G. C., & Prieto, E. I.	2025	Journal of Proteome Research
3	DNA-Based Nanobiosensor for the Colorimetric Detection of Dengue Virus Serotype 2 Synthetic Target Oligonucleotide	Flores, M. S. C., Alocilja, E. C., Amalin, D. M., Aguila, M. J. B., Purificacion, M. V., Merca, F. E., Manuel, M. C. C., Dimamay, M. P. S., Bautista, M. a. M., & Fernando, L. M.	2025	Biosensors, 15(2), 71

National Institute of Physics

	Document Title	Authors	Year	Source
1	Combination of searches for singly produced vectorlike top quarks in pp collisions at s=13 TeV with the ATLAS detector	Aad, G., Aakvaag, E., Abbott, B., Abdelhameed, S., Abeling, K., Abicht, N. J., Abidi, S. H., Aboelela, M., Aboulhorma, A., Abramowicz, H., Abreu, H., Abulaiti, Y., Acharya, B. S., Ackermann, A., Bourdarios, C. A., Adamczyk, L., Addepalli, S. V., Addison, M. J., Adelman, J., . . . Zwalinski, L.	2025	Physical Review D., 111(1)
2	Search for magnetic monopole pair production in ultraperipheral PB+PB collisions at SNN=5.36	Aad, G., Aakvaag, E., Abbott, B., Abdelhameed, S., Abeling, K., Abicht, N. J., Abidi, S. H., Aboelela, M., Aboulhorma, A., Abramowicz, H., Abreu, H., Abulaiti, Y., Acharya, B. S., Ackermann, A., Bourdarios, C. A., Adamczyk, L., Addepalli, S. V., Addison, M. J., Adelman, J., . . . Zwalinski, L.	2025	Physical Review Letters, 134(6), Pages 061803
3	Search for light neutral particles decaying promptly into collimated pairs of electrons or muons in pp collisions at s = 13 TeV with the ATLAS detector	Aad, G., Aakvaag, E., Abbott, B., Abdelhameed, S., Abeling, K., Abicht, N. J., Abidi, S. H., Aboelela, M., Aboulhorma, A., Abramowicz, H., Abreu, H., Abulaiti, Y., Acharya, B. S., Ackermann, A., Bourdarios, C. A., Adamczyk, L., Addepalli, S. V., Addison, M. J., Adelman, J., . . . Zwalinski, L.	2025	The European Physical Journal C, 85(3), Article number 335
4	Measurement of photonuclear jet production in ultraperipheral Pb+Pb collisions at sNN=5.02	Aad, G., Aakvaag, E., Abbott, B., Abdelhameed, S., Abeling, K., Abicht, N. J., Abidi, S. H., Aboelela, M., Aboulhorma, A., Abramowicz, H., Abreu, H., Abulaiti, Y., Acharya, B. S., Ackermann, A., Bourdarios, C. A., Adamczyk, L., Addepalli, S. V., Addison, M. J., Adelman, J., . . . Zwalinski, L.	2025	Physical Review. D/Physical Review. D., 111(5), Article number 052006
5	Search for Dark Matter Produced in Association with a Dark Higgs Boson in the bb¯ Final State Using pp Collisions at	Aad, G., Aakvaag, E., Abbott, B., Abdelhameed, S., Abeling, K., Abicht, N. J., Abidi, S. H., Aboelela, M., Aboulhorma, A., Abramowicz, H., Abreu, H., Abulaiti, Y., Acharya, B. S., Ackermann, A., Bourdarios, C. A., Adamczyk, L., Addepalli, S. V., Addison, M. J., Adelman, J., . . . Zwalinski, L.	2025	Physical Review Letters, 134(12), Article number 121801
6	Search for triple Higgs boson production in the 6b final state using pp collisions at s=13	Aad, G., Aakvaag, E., Abbott, B., Abdelhameed, S., Abeling, K., Abicht, N. J., Abidi, S. H., Aboelela, M., Aboulhorma, A., Abramowicz, H., Abulaiti, Y., Acharya, B. S., Ackermann, A., Bourdarios, C. A., Adamczyk, L., Addepalli, S. V., Addison, M. J., Adelman, J., Adiguzel, A., . . . Zwalinski, L.	2025	Physical Review. D/Physical Review. D., 111(3), Article number 032006
7	Search for a light charged Higgs boson in t→H±b decays, with H±→cs, in pp collisions at s=13TeV with the ATLAS detector	Aad, G., Aakvaag, E., Abbott, B., Abdelhameed, S., Abeling, K., Abicht, N., Abidi, S., Aboelela, M., Aboulhorma, A., Abramowicz, H., Abreu, H., Abulaiti, Y., Acharya, B., Ackermann, A., Bourdarios, C. A., Adamczyk, L., Addepalli, S., Addison, M., Adelman, J., . . . Zwalinski, L.	2025	The European Physical Journal C, 85(2), Article number 153
8	Finite-part integration of the Hilbert transform	Blancas, P. J. D., and Galapon, E. A.	2025	Integral Transforms and Special Functions, 1–17
9	Cluster structure and ordering in the nucleation and growth of binary molecular mixtures	Cabinta, J. G. Z., Hans, E. a. D. R., Tabag, R. T., Bantang, J. Y., and Nellas, R. B.	2025	The Journal of Physical Chemistry B
10	Holographic superfluid sound modes with bulk acoustic black hole	Candare, J. C. U., and Villegas, K. H. A.	2025	Nuclear Physics B, 1014, 4 Article number 116884
11	New insight into slow earthquake activities from continuous ocean bottom seismometers at the Guerrero seismic gap,Mexico	Chen, Y., Ito, Y., Plata-Martinez, R., Dominguez, L. A., Ohyanagi, S., Garcia, E. S., Flores, K., Cruz-Atienza, V. M., Shinohara, M., and Yamashita, Y.	2025	Geophysical Journal International, 241 (1) Pages 511 – 525
12	Analysis of hidden-charm pentaquarks as triangle singularities via deep learning.The ATLAS trigger system for LHC Run 3 and trigger performance in 2022	Co, D.A.O. and Sombillo, D.L.B.	2025	10th International Conference on Quarks and Nuclear Physics (QNP2024) – B. Hadron Spectroscopy, 465, Code 207765
13	Spatial variation of the elemental components of thin films from BiSrCaCuO target deposited using low energy femtosecond pulsed laser deposition in high background gas pressure	De Mata, J. K., Sarmago, R., Garcia, W., and Dasallas, L.	2025	Journal of Vacuum Science & Technology B Nanotechnology and Microelectronics Materials Processing Measurement and Phenomena, 43(2).
14	Direct simulation Monte Carlo modeling of shock-plume interactions during laser-produced plasma expansion in a background gas.	Emperado, R. B., Zosa, M. a. H., Dasallas, L. L., and Garcia, W. O.	2025	Physics of Fluids, 37(3), Article number 036149
15	Time-resolved culture maps derived from the Integrated Values Survey data (1981-2022).	Euste, J. L., Arjonillo, H. C., and Saloma, C.	2025	Physica a Statistical Mechanics and Its Applications, 659, Article number 130317
16	Characteristic time operators as quantum clocks	Farrales, R. a. E., and Galapon, E. A.	2025	Physics Letters A, 532, Article number 130192
17	Self-supervised learning for denoising quasiparticle interference data.	Kuijf, I. S., Tromp, W. O., Benschop, T., Ramones, N. P., Sulangi, M. A., Van Nieuwenburg, E. P. L., and Allan, M. P.	2025	Physical Review B, 111(3), Article number 035136.
18	Binarizing historical architectural drawings with shallow convolutional autoencoders.	Narag, M. J. G., Lico, G. R., and Soriano, M.	2025	Engineering Applications of Artificial Intelligence, 148, Article number 110400.
19	Enhancing geothermal petrography with convolutional neural networks	Padrique, M. G. C., Narag, M. J. G., Fernando, A. G. S., and Soriano, M. N.	2025	Geothermics, 127, Article number 103221.
20	Terminating Poincaré asymptotic expansion of the Hankel transform of entire exponential type functions.	Rojas, N. L. R., and Galapon, E. A.	2025	The Ramanujan Journal, 66(4), Article number 63
21	Pole structure of Pψ N(4312)+ via machine learning and uniformized S-matrix.	Santos, L. M., Chavez, V. A., and Sombillo, D. L. B.	2025	Journal of Physics G Nuclear and Particle Physics, 52(1), Article number 015104.
22	Exact evaluation and resummation of the divergent expansion for the Heisenberg–Euler Lagrangian	Tica, C. D., Blancas, P. J. D., and Galapon, E. A.	2025	Proceedings of the Royal Society a Mathematical Physical and Engineering Sciences, 481(2310), Article number 20240843.

Natural Sciences Research Institute

	Document Title	Authors	Year	Source
1	Direct integration of iron oxide nanoparticles on bacterial cellulose for dye degradation in water	Budlayan, M. L. M., Patricio, J. N., Palangyos, D. C., Guerrero, R. A., & Arco, S. D.	2025	Solid State Phenomena
2	Draft genome of Streptococcus agalactiae serotype Ia FBC260 causing hemorrhagic septicemia with massive cellular meningitis in cultured Nile tilapia from the Philippines	Choresca, C. H., Legario, F. S., De Leon, M. E. E., Santos, M. N. M., Bumanlag, B. E., Ca-as, C. G. P., Gente, A. A., & Gloria, P. C. T.	2025	Microbiology Resource Announcements.
3	A systematic study on the use of biogenic acids in directing the hyperbranched growth of Au nanocorals	Ende, C. P. Y., Ramos, R. M. C. R., Pangilinan, P. J. A., Bautista, R. I., Escosio, J. R. L., & Regulacio, M. D.	2025	CrystEngComm
4	Draft genome of Talaromyces sp. UPCC 4333, from Senna alata flowers, displayed a remarkable diversity of potentially novel biosynthetic gene clusters	Eugenio, R. B., Gloria, P. C. T., & Relucio-San Diego, M. A. C. V.	2025	Microbiology Resource Announcements
5	Multiple plant Growth–Promoting activities exhibited by Root‐Associated bacteria isolated from bamboo and corn.pH-Responsive Properties of Bis-urea-based Supramolecular Hydrogels	Flores, C. A. R., Siringan, M. A. T., & Relucio-San Diego, M. A. C. V.	2025	International Journal of Microbiology
6	Draft genome of a Bacillus subtilis ICS isolated from an okra ( Abelmoschus esculentus ) extract exhibited genes related to plant growth-promoting potential	Gloria, P. C. T., Luague, M. J. A., Siringan, M. A. T., & Argayosa, V. B.	2025	Microbiology Resource Announcements
7	Barriers to human remains identification using forensic odontology in resource-constrained settings	Guzman, E.J.T. & De Ungria, M.C.A.	2025	Forensic Science International: Synergy
8	Prediction models for antimicrobial resistance of Escherichia coli in an agricultural setting around Metro Manila, Philippines.Probing interfaces and non-centrosymmetry using SHG: a short study guide	Lopez, M.C.D.P., Lansangan, J.R.G., & Vital, P.G.	2025	Malaysian Journal of Microbiology
9	Detection of Foodborne Pathogen Vibrio parahaemolyticus in Milkfish and Nile Tilapia from Selected Wet Markets in Quezon City, Philippines	Palar, S.L.T., Lantican, N.B., Vital, P.G.	2025	EnvironmentAsia
10	Comparative genomics reveals putative copper tolerance genes in a Fusarium oxysporum strain	Ragasa, L. R. P., Cuomo, C. A., Del Rosario, R. C. H., & Velarde, M. C.	2025	G3 Genes Genomes Genetics
11	Detection of antimicrobial resistance genes (ARGs) in surface waters and the anthropogenic factors influencing its abundance: A systematic review	Sena, D. C., Sabio, M. C. J. F., Lopez, M. C. D. P., & Vital, P. G.	2025	Journal of Applied and Natural Science
12	MAGnificent microbes: metagenome-assembled genomes of marine microorganisms in mats from a Submarine Groundwater Discharge Site in Mabini, Batangas, Philippines	Veluz, J. T., Gloria, P. C. T., Mallari, L. A. N., Enova, A. E. R., & Siringan, M. A. T.	2025	Frontiers in Marine Science
13	Exploring the taxonomical and functional profiles of marine microorganisms in Submarine Groundwater Discharge vent water from Mabini, Batangas, Philippines through metagenome-assembled genomes	Veluz, J. T., Mallari, L. A. N., Gloria, P. C. T., & Siringan, M. A. T.	2025	Frontiers in Genetics
14	Integrating building code to microbial count studies in urban built spaces with ventilation and human presence: a model	Villoria, M. B. D., Argayosa, V. B., Rosalinas, A. D., Valerio, D. N. R., La Madrid, C. L., & Ticzon, M. X. N.	2025	Frontiers in Built Environment

Science and Society Program

	Document Title	Authors	Year	Source
1	The ethnoarchaeology of restaurants in southern Vietnam: fish stew culinary practices and organic residues in earthenware cooking pots	Eusebio, M. S., & Campos, F. Z.	2024	Ethnoarchaeology, 1–23
2	This Little Piggy: Pig-Human entanglement in the Philippines	Lingao, J. Q., Rofes, J., Eusebio, M., Barretto-Tesoro, G., & Herrera, M.	2024	International Journal of Historical Archaeology